Pap-MIR171b

Basic info.

• miRNA locus ID
• Pap-MIR171b

• miRNA locus accession
• PmiREN016672

• Organism
• Phalaenopsis aphrodite

• Genomic location
• Pap-NEWO01000069.1  775978  776103  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   TGT        CTA             C       C     CAA   ATCGCTAGCCATCGAA
      TGAAAGAG   CTGAGATGTTGGC CGGTTCA TCAAA   GGC                
      ||||||||   ||||||||||||| ||||||| |||||   |||                C
      ACTTTCTC   GATTCTATAACCG GCCGAGT AGTTT   TTT                
TTCTAT        -AC             T       T     ---   GTCTGGCCTCGCCAGC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference