Pap-MIR171c

Basic info.

• miRNA locus ID
• Pap-MIR171c

• miRNA locus accession
• PmiREN016673

• Organism
• Phalaenopsis aphrodite

• Genomic location
• Pap-NEWO01000321.1  281317  281433  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  TGAGCGTAATTTGAAC G                        CG   T    -   TG
                  G GATATTGGTGCGGTTCAATTAGAG  TAG GCTT CAA  
                  | ||||||||||||||||||||||||  ||| |||| |||   
                  C CTATAACCGTGCCGAGTTAGTTTC  GTC CGAA GTT  
TCTTCGACCACTTCCGTG G                        TT   T    A   AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference