PmiREN: Plant microRNA Encyclopedia

Pvu-MIR171b

Basic info.

miRNA locus ID
Pvu-MIR171b

miRNA locus accession
PmiREN016753

Organism
Phaseolus vulgaris

Genomic location
Pvu-Chr02 45533724 45533836 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TGTAAAATTTTAGGTGGG        G  A           T    TCT    AT
                    GATGTTGG AC ATTCAATCAAA CAAA   CCTA  
                    |||||||| || ||||||||||| ||||   ||||  G
                    CTATAACC TG TGAGTTAGTTT GTTT   GGGT  
CAAATACCAATCGTCCTTGA        G  C           C    CCT    CA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Phvul.008G143400.1	1.0	NA	NA
Phvul.010G072700.2	1.0	NA	NA
Phvul.010G072900.1	1.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvu-MIR171b

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