PmiREN: Plant microRNA Encyclopedia

Pvu-MIR171d

Basic info.

miRNA locus ID
Pvu-MIR171d

miRNA locus accession
PmiREN016755

Organism
Phaseolus vulgaris

Genomic location
Pvu-Chr09 9498893 9499012 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TTCTGCAA         T  T                  A      TT    C  C   T
           AAGTAGACA GG GTGATATTGGTTTGGCTC TCTTAA  CAAG GT ATA 
           ||||||||| || |||||||||||||||||| ||||||  |||| || ||| C
           TTCGTTTGT TC CATTATAACTAAGCCGAG AGAGTT  GTTC TA TAT 
TTATACGTTAC         -  T                  C      --    -  C   A

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Phvul.009G122700.1	0.5	0	NA
Phvul.008G165200.1	1.0	0	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvu-MIR171d

>