PmiREN: Plant microRNA Encyclopedia

Pvu-MIR171f

Basic info.

miRNA locus ID
Pvu-MIR171f

miRNA locus accession
PmiREN016757

Organism
Phaseolus vulgaris

Genomic location
Pvu-Chr05 34682728 34682847 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AGAAT   C    TTA   G         C         GA       A    CAAAAT
       GGA CGGT   ACG GATATTGGT CGGTTCAAT  GAAAGCA TGCT      
       ||| ||||   ||| ||||||||| |||||||||  ||||||| ||||       
       CCT GTCA   TGC CTATAACCG GCCGAGTTA  TTTTCGT ACGG      
CCAAAAC   C    CCG   A         T         GC       C    ACTCTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Phvul.008G143400.1	1.5	NA	NA
Phvul.010G072700.2	1.5	NA	NA
Phvul.010G072900.1	1.5	NA	NA
Phvul.002G027500.1	2.0	1	NA
Phvul.008G165200.1	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvu-MIR171f

>