PmiREN: Plant microRNA Encyclopedia

Pda-MIR171a

Basic info.

miRNA locus ID
Pda-MIR171a

miRNA locus accession
PmiREN016891

Organism
Phoenix dactylifera

Genomic location
Pda-NW_008246583.1 294352 294475 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GA      T   T    T         C       C     AA    ---TC       AACA
     ATGAAA AGT ACTA GATGTTGGC CGGTTCA TCAGA  ACGC     CTAGGGC    
     |||||| ||| |||| ||||||||| ||||||| |||||  ||||     |||||||    C
     TACTTT TCA TGAT CTATAACCG GCCGAGT AGTCT  TGCG     GATTTCG    
CTTCC      C   -    T         T       T     --    TCCTA       GAAG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_008779865.2	0.5	NA	NA
XM_008797396.2	0.5	0	NA
XM_008798584.3	0.5	NA	NA
XM_026806097.1	0.5	NA	NA
XM_026806639.1	0.5	NA	NA
XM_008788754.3	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pda-MIR171a

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