Pda-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 GAT         -              A            A  C     GAG      CAATAT
    GCTAGGTAG GAGTGTGATGTTGG ATGGCTCAATCG AT AAACT   TCGAAT      
    ||||||||| |||||||||||||| |||||||||||| || |||||   ||||||      C
    CGATTCGTT CTCACACTATAACC TGCCGAGTTAGT TA TTTGA   GGTTTA      
AGTT         T              G            C  T     -GG      ATACAT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_008779865.2 0.5 NA NA
XM_008797396.2 0.5 0 NA
XM_008798584.3 0.5 NA NA
XM_026806097.1 0.5 NA NA
XM_026806639.1 0.5 NA NA
XM_008788754.3 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference