Pda-MIR171e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
         -A      T     AAGC          A         C  T   GGAC      TAT
     GATT  GGTGGA GAAAG    GATATTGGTG GGTTCAATC GA GAT    TTTACG   
     ||||  |||||| |||||    |||||||||| ||||||||| || |||    ||||||    
     CTAG  TCACCT CTTTC    CTATAACCGC CCGAGTTAG CT CTA    AAATGC   
TCTCT    CG      -     ---A          G         A  -   -ATC      TAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_008779865.2 1.0 NA NA
XM_008797396.2 1.0 1 NA
XM_008798584.3 1.0 NA NA
XM_026806097.1 1.0 NA NA
XM_026806639.1 1.0 NA NA
XM_008784011.3 2.0 NA NA
XM_008809951.3 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference