Pda-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     TA   G      T  CA         G       A   AG  --TC    CAA     ATCT
  ATG  GGT GAGAGA GA  TGATATTGG TCGGCTC GCC  CT    AACT   GGAGG    
  |||  ||| |||||| ||  ||||||||| ||||||| |||  ||    ||||   |||||     
  TAC  CCG TTCTCT CT  ACTATAACC AGCCGAG CGG  GG    TTGA   TCTCT    
GG   CG   A      T  TC         A       C   AG  CTTC    ---     ACGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_008784011.3 1.0 NA NA
XM_008809951.3 1.0 NA NA
XM_008792915.3 1.5 2 NA
XM_008792916.3 1.5 2 NA
XM_008794589.3 1.5 2 NA
XM_008794591.3 1.5 2 NA
XM_017843392.2 1.5 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference