Pda-MIR171k

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
            TTCTGAC     --T               C          AA         CATGC
       GTGTT       CGAGT   GGAGGTATTGGCGTG CTCAATCTGA  ACATGGTTA     
       |||||       |||||   ||||||||||||||| ||||||||||  |||||||||      
       CACAA       GCTCG   CCTCTATAACTGCGC GAGTTAGGTT  TGTACCGAT     
CTACACT     -------     TTT               C          AA         AAACT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_008788754.3 0.5 NA NA
XM_008798584.3 1.0 NA NA
XM_026806097.1 1.0 NA NA
XM_026806639.1 1.0 NA NA
XM_008779865.2 1.5 NA NA
XM_008797396.2 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference