PmiREN: Plant microRNA Encyclopedia

Ppa-MIR171a

Basic info.

miRNA locus ID
Ppa-MIR171a

miRNA locus accession
PmiREN017109

Organism
Physcomitrella patens

Genomic location
Ppa-Chr22 9196811 9196931 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

       CAAATTCTTT   C              GC        A    A C     T  G
   GGGG          AGG ATGTGATATTGGTG  GCTCAATC GATG C ATGCC GT 
   ||||          ||| ||||||||||||||  |||||||| |||| | ||||| || A
   CTCT          TCC TACACTATAACCGC  CGAGTTAG CTAC G TGCGG CG 
GTT    ATCTCTTCAT   -              GC        A    C T     T  T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pp3c12_10V3.1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Ppa-MIR171a

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