PmiREN: Plant microRNA Encyclopedia

Ppa-MIR171b

Basic info.

miRNA locus ID
Ppa-MIR171b

miRNA locus accession
PmiREN017110

Organism
Physcomitrella patens

Genomic location
Ppa-Chr18 5847796 5847992 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     GCTTGC       T  ACAGCAT             A     T  CT    --GC     CTACGTTTTGTCTGGAAGGGAAGTATTCTTGAGGCATGT
           CGAGGAA GA       GTGTTGGTGTGGC TCAAT CT  GGAT    GAGTG                                       
           ||||||| ||       ||||||||||||| ||||| ||  ||||    |||||                                       G
           GTTCCTT CT       TATAACCGCGCCG AGTTA GA  CCTG    GGTCG                                       
TGTCTTCGTTA       C  ---ACAC             -     -  CT    TTAT     GCAACGACCTTTTCTGTAGACTAACTCGCCCGGGTTATT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pp3c12_10V3.1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Ppa-MIR171b

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