PmiREN: Plant microRNA Encyclopedia

Peu-MIR171g

Basic info.

miRNA locus ID
Peu-MIR171g

miRNA locus accession
PmiREN017365

Organism
Populus euphratica

Genomic location
Peu-NW_011499918.1 175997 176119 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  ATGTTTCTTCA   AAA   G           G           A    A     CCAAG
             GAG   ACG GATATTGGTAC GTTCAATCAGA AGTA TGCTC     
             |||   ||| ||||||||||| ||||||||||| |||| |||||     A
             CTC   TGC CTATAACCGTG CGAGTTAGTTT TTAT ATGAG     
AGCTCTCCTTCTA   GCA   A           G           G    C     ATATG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_011032415.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Peu-MIR171g

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