Ptr-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   GCT      T T     C         C       C       --AAA   -      -          AAGATC
      TGAAAG G CATTG GATGTTGGC CGGTTCA TCAGAGA     GAC ACCATT TTTTTTCAAG      
      |||||| | ||||| ||||||||| ||||||| |||||||     ||| |||||| ||||||||||      A
      ACTTTC C GTGAT CTATAACCG GCCGAGT AGTCTCT     CTG TGGTAA AAGAAAGTTC      
TTATTT      T -     T         T       T       GCTGG   G      T          GAAACT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Potri.001G122800.4 0.5 NA NA
Potri.002G144200.2 0.5 NA NA
Potri.002G144700.1 0.5 NA NA
Potri.014G060200.1 0.5 NA NA
Potri.014G060500.1 0.5 NA NA
Potri.004G013800.1 1.0 1 NA
Potri.005G125800.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference