Ptr-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GCTAAGGAGGCAAAAGA   C          A         C  A  -  -GA      C  GAA
                   AAG GATGTTGGTG GGTTCAATC GA GA CG   TTTACA GT   
                   ||| |||||||||| ||||||||| || || ||   |||||| ||   A
                   TTC CTATAACCGC CCGAGTTAG CT CT GC   AAATGT TA   
TTTCGTTTATTGGGACTCT   A          G         A  -  A  ATA      -  ATG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Potri.001G122800.4 1.0 NA NA
Potri.002G144200.2 1.0 NA NA
Potri.002G144700.1 1.0 NA NA
Potri.014G060200.1 1.0 NA NA
Potri.014G060500.1 1.0 NA NA
Potri.002G086100.1 2.0 1 NA
Potri.005G175300.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference