Ptr-MIR171d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GCTATGGAAACAAAA     C          A         C  A  - A     AC  GAGT
                 GAAAG GATGTTGGTG GGTTCAATC GA GA C GATTT  AC    
                 ||||| |||||||||| ||||||||| || || | |||||  ||     
                 TTTTC CTATAACCGC CCGAGTTAG CT CT G CTAAA  TG    
TTTTCGTTTCTCGAGAC     A          G         A  -  A C     -A  AAAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Potri.001G122800.4 1.0 NA NA
Potri.002G144200.2 1.0 NA NA
Potri.002G144700.1 1.0 NA NA
Potri.014G060200.1 1.0 NA NA
Potri.014G060500.1 1.0 NA NA
Potri.002G086100.1 2.0 1 NA
Potri.005G175300.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference