PmiREN: Plant microRNA Encyclopedia

Ptr-MIR171l

Basic info.

miRNA locus ID
Ptr-MIR171l

miRNA locus accession
PmiREN017550

Organism
Populus trichocarpa

Genomic location
Ptr-Chr15 544181 544301 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TCT         G   C  T           C      AT    T  GCATAAGCATCTG
      GGAGAAGTA ACA GG GTGATATTGGT CGGCTC  CTTC GT             
      ||||||||| ||| || ||||||||||| ||||||  |||| ||             A
      CTTCTTCGT TGT TC CACTATAACTA GCCGAG  AGAA GT             
ACTACC         A   -  T           A      -C    -  ACTCACTTCTTGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Potri.002G086100.1	1.5	1	NA
Potri.005G175300.1	1.5	1	NA

Mature miRNA conservation

Link

Reference

No reference

Ptr-MIR171l

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