PmiREN: Plant microRNA Encyclopedia

Rco-MIR171b

Basic info.

miRNA locus ID
Rco-MIR171b

miRNA locus accession
PmiREN018242

Organism
Ricinus communis

Genomic location
Rco-29842 404383 404497 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CAAAAGAA   C     A                       G T  -TT      TA
          ATG GTACG GATATTGGTGCGGTTCAATCAGA A CA   GCTCTA  
          ||| ||||| ||||||||||||||||||||||| | ||   ||||||   
          TAT CGTGC CTATAACCGTGCCGAGTTAGTTT T GT   CGAGAT  
GATATATATA   A     A                       G T  TTT      AT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
29916.m000544	0.5	NA	NA
30174.m008828	0.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Rco-MIR171b

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