PmiREN: Plant microRNA Encyclopedia

Rco-MIR171f

Basic info.

miRNA locus ID
Rco-MIR171f

miRNA locus accession
PmiREN018246

Organism
Ricinus communis

Genomic location
Rco-29784 175547 175687 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GC          G    T         C       C     -    ---A   CTAT    TC  CT  TT
     ATGAAATAGT ATTG GATATTGGC TGGTTCA TCAGA CATG    AAC    CCCT  TC  GC  
     |||||||||| |||| ||||||||| ||||||| ||||| ||||    |||    ||||  ||  ||  A
     TACTTTGTCG TGAC CTATAACCG GCCGAGT AGTTT GTAT    TTG    GGGA  AG  CG  
TAGTC          -    T         T       T     T    ATCG   TTGT    TA  TC  TT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
29916.m000544	0.5	NA	NA
30174.m008828	0.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Rco-MIR171f

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