Scu-MIR171b

Basic info.

• miRNA locus ID
• Scu-MIR171b

• miRNA locus accession
• PmiREN018404

• Organism
• Saccharum hybrid cultivar

• Genomic location
• Scu-JXQF01060456.1  2218  2344  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

        AAT   C C    G                    C      TC       --  A   AGG
     TGC   GGC G GACG GGTATTGGCGCGGTTCAATT GAGAGC  GAGCCCT  AG TCG   
     |||   ||| | |||| |||||||||||||||||||| ||||||  |||||||  || |||   C
     ACG   TCG C CTGC CTATAACCGTGCCGAGTTAG CTCTCG  CTCGGGG  TC AGC   
CGCTC   --C   C -    A                    T      -T       GG  -   GAC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference