Scu-MIR171d

Basic info.

• miRNA locus ID
• Scu-MIR171d

• miRNA locus accession
• PmiREN018406

• Organism
• Saccharum hybrid cultivar

• Genomic location
• Scu-JXQF01109005.1  2194  2308  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  CTCTAGTAAACCT   G                       A  CTT C     AAAG
               ACG GATATTGGCGCGGTTCAATCAGA AG   G GCTCC    
               ||| ||||||||||||||||||||||| ||   | |||||     
               TGC CTATAACCGTGCCGAGTTAGTTT TC   C CGGGG    
TACCCGTTTCGCTCC   A                       C  -AC T     ACCC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference