Scu-MIR171f

Basic info.

• miRNA locus ID
• Scu-MIR171f

• miRNA locus accession
• PmiREN018408

• Organism
• Saccharum hybrid cultivar

• Genomic location
• Scu-JXQF01125223.1  4767  4893  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

     C  AAT   C C    G                    C      TC       AGA    -  CC
      GC   GGC G GACG GGTATTGGCGCGGTTCAATT GAGAGC  GAGCCCT   TCGG GG  
      ||   ||| | |||| |||||||||||||||||||| ||||||  |||||||   |||| ||   
      CG   TCG C CTGC CTATAACCGTGCCGAGTTAG CTCTCG  CTCGGGG   GGTC CC  
CGCTCA  --C   C -    A                    T      -T       ---    A  GA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference