Scu-MIR171g

Basic info.

• miRNA locus ID
• Scu-MIR171g

• miRNA locus accession
• PmiREN018409

• Organism
• Saccharum hybrid cultivar

• Genomic location
• Scu-JXQF01128612.1  4034  4175  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  GTTGGCTGAGAGAG  C                          --------C     -   G   CTTAATTTT
                TG GATGTTGGCATGGTTCAATCAAATCG         GCGCC CGG TGA         
                || ||||||||||||||||||||||||||         ||||| ||| |||         G
                AC CTATAACCGTGCCGAGTTAGTTTGGC         CGTGG GCT GCT         
TATCCGATCTCTTCCA  A                          ACCTTTGAT     A   G   AGCTTTCGC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference