Scu-MIR171j

Basic info.

• miRNA locus ID
• Scu-MIR171j

• miRNA locus accession
• PmiREN018412

• Organism
• Saccharum hybrid cultivar

• Genomic location
• Scu-JXQF01145953.1  1668  1799  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   A           G   T         T       C     -C    TCGTTGTCCATT   C   AG  CA
    ATGGAATAGTA CTA GATGTTGGC CGGCTCA TCAGA  CACC            GCG GCG  AT  
    ||||||||||| ||| ||||||||| ||||||| |||||  ||||            ||| |||  ||  T
    TACCTTATCAT GAT CTATAACCG GCCGAGT AGTCT  GTGG            CGC CGC  TA  
TACA           -   T         T       T     TT    -----------T   -   CG  TG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference