Scu-MIR171k

Basic info.

• miRNA locus ID
• Scu-MIR171k

• miRNA locus accession
• PmiREN018413

• Organism
• Saccharum hybrid cultivar

• Genomic location
• Scu-JXQF01187347.1  8570  8694  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   A       T   A   T         T       C       TTGA      AG G  GAA
    ATGGAAG GTA CTA GGTGTTGGC CGGCTCA TCAGAAG    AGTAGT  T AT   
    ||||||| ||| ||| ||||||||| ||||||| |||||||    ||||||  | ||   T
    TACTTTC CAT GAT CTATAACCG GCCGAGT AGTCTTT    TCATCG  G TA   
TTTG       T   -   T         T       T       GCGG      AT G  ATC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference