Smo-MIR171a

Basic info.

• miRNA locus ID
• Smo-MIR171a

• miRNA locus accession
• PmiREN018553

• Organism
• Selaginella moellendorffii

• Genomic location
• Smo-scaffold_47  1208846  1208980  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  C     AG  C         T T        G    ACG       --A  G  -   AAA    G G
   GAGCG  AG GATATTGGC C GCTCAATC CATG   CTGCTGC   TC CA CGA   ATTT C 
   |||||  || ||||||||| | |||||||| ||||   |||||||   || || |||   |||| | A
   TTTGT  TC CTATAACCG G CGAGTTAG GTAC   GACGACG   AG GT GCT   TAAG G 
CTT     GG  A         T C        A    GGA       CTG  -  A   AGG    G T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference