PmiREN: Plant microRNA Encyclopedia

Smo-MIR171c

Basic info.

miRNA locus ID
Smo-MIR171c

miRNA locus accession
PmiREN018554

Organism
Selaginella moellendorffii

Genomic location
Smo-scaffold_190 40749 40956 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ATCGAAAT       --T  TT          A           C   AC      TACAAACACCGAAAAGAGAAGCTTTACGATGGTCTAGCAAAGTTCTTCTCGCGA
        CGATGTG   GC  TGATATTGGC TGATTCAATCC ATG  ACCATC                                                      
        |||||||   ||  |||||||||| ||||||||||| |||  ||||||                                                      A
        GTTGCGT   TG  ACTATAACCG GCTGAGTTAGG TAC  GGTCGT                                                      
               TAG  -T          C           T   --      GGGAAACGAGCAGGTACGGTGCTTTAAAACCGATCTAGAAGCATTCCGAAGAGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
444260	1.5	NA	NA
113858	2.0	1	NA

Mature miRNA conservation

Link

Reference

No reference

Smo-MIR171c

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