PmiREN: Plant microRNA Encyclopedia

Sit-MIR171c

Basic info.

miRNA locus ID
Sit-MIR171c

miRNA locus accession
PmiREN018674

Organism
Setaria italica

Genomic location
Sit-scaffold_9 56807297 56807426 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GG      T    G   T         T       C     -TG       TCTCTGCTGGGGC
     ATGAAA AGTA CTA GATGTTGGC CGGCTCA TCAGA   ACCACCC             
     |||||| |||| ||| ||||||||| ||||||| |||||   |||||||             G
     TACTTT TCAT GAT CTATAACCG GCCGAGT AGTCT   TGGTCGC             
CATCA      C    -   T         T       T     TTG       TAGAGCGCACGTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.1G262900.1	0.5	NA	NA
Seita.4G003600.1	0.5	NA	NA
Seita.9G330300.1	1.0	NA	NA
Seita.9G105100.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Sit-MIR171c

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