PmiREN: Plant microRNA Encyclopedia

Sit-MIR171d

Basic info.

miRNA locus ID
Sit-MIR171d

miRNA locus accession
PmiREN018675

Organism
Setaria italica

Genomic location
Sit-scaffold_9 39738518 39738665 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

    -       T   G   T         T       C        TGA      CA    CCA  G TCT     GG
  AA ATGGAAG GTA CTA GGTGTTGGC CGGCTCA TCAGAAGC   AGGAGC  TGGC   TG A   AGCTG  
  || ||||||| ||| ||| ||||||||| ||||||| ||||||||   ||||||  ||||   || |   |||||   
  TT TACTTTC CAT GAT CTATAACCG GCCGAGT AGTCTTTG   TCCTCG  ATCG   AC T   TCGAC  
GC  G       C   -   T         T       T        CGG      --    -TG  G ---     AC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.1G262900.1	0.5	NA	NA
Seita.4G003600.1	0.5	NA	NA
Seita.9G330300.1	1.0	NA	NA
Seita.9G105100.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR171d

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