PmiREN: Plant microRNA Encyclopedia

Sit-MIR171e

Basic info.

miRNA locus ID
Sit-MIR171e

miRNA locus accession
PmiREN018676

Organism
Setaria italica

Genomic location
Sit-scaffold_9 6333260 6333390 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   T    --     CG  C                     A   --   -T   CT     -   GTG
GGT GGCT  GGGAG  TG GATGTTGGCATGGTTCAATCA ATC  GGG  GAT  TTGCC CTT   
||| ||||  |||||  || ||||||||||||||||||||| |||  |||  |||  ||||| |||    
TCA CCGA  CCTTC  AC CTATAACCGTGCCGAGTTAGT TAG  TCC  CTG  GGTGG GGA   
   T    AT     AA  A                     C   TT   TT   -T     T   GTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.1G262900.1	0.5	NA	NA
Seita.4G003600.1	0.5	NA	NA
Seita.9G330300.1	1.0	NA	NA
Seita.9G105100.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR171e

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