PmiREN: Plant microRNA Encyclopedia

Sit-MIR171f

Basic info.

miRNA locus ID
Sit-MIR171f

miRNA locus accession
PmiREN018677

Organism
Setaria italica

Genomic location
Sit-scaffold_1 34236033 34236160 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AGT    -    CG      C         T          G C    --AATT   GG    GTG
     GAAT AAGA  ACATGG GTGGTGTTG TTCGGCTCAT C CTCC      CCT  GGCG   
     |||| ||||  |||||| ||||||||| |||||||||| | ||||      |||  ||||    
     CTTA TTCT  TGTACT CACTATAAC AAGCCGAGTA G GAGG      GGA  CCGC   
AAATT    C    TA      -         C          - A    GCACAC   -A    TAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.9G455500.1	0.0	NA	NA
Seita.3G233600.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR171f

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