PmiREN: Plant microRNA Encyclopedia

Sit-MIR171g

Basic info.

miRNA locus ID
Sit-MIR171g

miRNA locus accession
PmiREN018678

Organism
Setaria italica

Genomic location
Sit-scaffold_7 27390799 27390912 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GGAA   -     CG      C         TTC           - T   TGA   TG
      GAA GAAGA  ACATGG GTGGTATTG   CGGCTCATGTC C TCT   GTC  
      ||| |||||  |||||| |||||||||   ||||||||||| | |||   |||   
      CTT CTTCT  TGTACT CACTATAAC   GCCGAGTGTAG G AGG   CGG  
AAAAGA   A     TA      -         CAA           T T   ---   CT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.9G455500.1	0.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Sit-MIR171g

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