Sla-MIR171d

Basic info.

• miRNA locus ID
• Sla-MIR171d

• miRNA locus accession
• PmiREN018833

• Organism
• Silene latifolia

• Genomic location
• Sla-LHUT01065021.1  910  1046  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  AAT      T       T         C       C   --          TTATTT     -       A
     TGGAAG GTCATTG GATGTTGGC CGGTTCA TCA  AGAGATCGAT      ACGAG CCGTTTT 
     |||||| ||||||| ||||||||| ||||||| |||  ||||||||||      ||||| ||||||| A
     ACTTTC TAGTGAT CTATAACCG GCCGAGT AGT  TCTTTAGCTA      TGTTC GGTAAAA 
TATGT      T       T         T       T   TT          -----T     T       T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference