Sha-MIR171c

Basic info.

• miRNA locus ID
• Sha-MIR171c

• miRNA locus accession
• PmiREN018934

• Organism
• Solanum habrochaites

• Genomic location
• Sha-CBYS010023422.1  13757  13870  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

 TTAATA     -    A          A               C    TC     AG
       GTATA GTAA ATGATGTTGG ATGGCTCAATCAAAT AAAT  CTCAA  
       ||||| |||| |||||||||| ||||||||||||||| ||||  |||||   
       TATAT CATT TACTATAACC TGCCGAGTTAGTTTA TTTA  GGGTT  
ACTCGTA     T    C          G               C    CT     AT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference