Sha-MIR171d

Basic info.

• miRNA locus ID
• Sha-MIR171d

• miRNA locus accession
• PmiREN018935

• Organism
• Solanum habrochaites

• Genomic location
• Sha-CBYS010000605.1  11490  11615  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  TATAT      -----       C          A            A  -  -AG     GTTTT
TA     TGAATT     AGAGAAG GATGTTGGTG GGTTCAATCTGA GA CG   TTTAC     
||     ||||||     ||||||| |||||||||| |||||||||||| || ||   |||||     A
AT     ACTTAA     TTTCTTT CTATAACCGC CCGAGTTAGACT CT GC   AAATG     
  ---TT      CCATT       A          G            -  A  AAG     ATTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference