Sha-MIR171e

Basic info.

• miRNA locus ID
• Sha-MIR171e

• miRNA locus accession
• PmiREN018936

• Organism
• Solanum habrochaites

• Genomic location
• Sha-CBYS010008052.1  44768  44892  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

TGGGATT        ---------     C          A         C  A  -  -AA      CTTA
       AAAATGGA         AGAAG GATGTTGGTG GGTTCAATC GA GA CG   TTTACG    
       ||||||||         ||||| |||||||||| ||||||||| || || ||   ||||||     
       TTTTACCT         TCTTC CTATAACCGC CCGAGTTAG CT CT GT   AAATGC    
               TACTTTTAT     A          G         A  -  A  AAG      TTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference