Sha-MIR171f

Basic info.

• miRNA locus ID
• Sha-MIR171f

• miRNA locus accession
• PmiREN018937

• Organism
• Solanum habrochaites

• Genomic location
• Sha-CBYS010016756.1  26881  27009  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  CTA     C  T    TT         C       C      ----   -     GA      ATT
     TGAAA GG AACT  GATATTGGC TGGTTCA TCAGAC    AAC AAAAT  AACTAT   
     ||||| || ||||  ||||||||| ||||||| ||||||    ||| |||||  ||||||    
     ACTTT TC TTGA  TTATAACCG GCCGAGT AGTTTG    TTG TTTTG  TTGGTA   
CTTTC     C  T    CT         T       T      CTTT   C     AG      AGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference