Sly-MIR171b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  ATTTTAATTCTTCTA   A                       A    CAC    TTAT
                 ACG GATATTGGTGCGGTTCAATTAGA AGCG   TTCT    
                 ||| ||||||||||||||||||||||| ||||   ||||     
                 TGC CTATAACCGTGCCGAGTTAATTT TTGC   AAGA    
AAGTTGCAATATCATTA   A                       A    TTC    TATA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Solyc12g010060.2.1 4.0 NA 2 (6)
Solyc02g079100.3.1 5.0 NA 2 (1)
Solyc02g078990.3.1 NA NA 2 (5)
Solyc03g082660.3.1 NA NA 2 (5)
Solyc03g117760.3.1 NA NA 2 (5)
Solyc06g009380.3.1 NA NA 2 (3)
Solyc06g060370.3.1 NA NA 2 (4)
Solyc06g083680.3.1 NA NA 2 (8)
Solyc09g063130.3.1 NA NA 2 (7)
Solyc11g007540.2.1 NA NA 2 (3)
Solyc11g065740.2.1 NA NA 2 (5)
Solyc12g088430.1.1 NA NA 2 (2)
Solyc08g078800.1.1 1.5 0 4 (1)
Solyc01g090950.3.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference