Sly-MIR171e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 TTAATA     -    A          A               C    TT     AG
       GTATA GTAA ATGATGTTGG ATGGCTCAATCAAAT AAAT  CTCAA  
       ||||| |||| |||||||||| ||||||||||||||| ||||  |||||   
       TATAT CATT TACTATAACC TGCCGAGTTAGTTTA TTTA  GGGTT  
ACTCATA     T    C          G               C    CT     AT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Solyc01g090950.3.1 0.5 NA NA
Solyc08g078800.1.1 0.5 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference