Sly-MIR171d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TGGGATTAAAATGG      C          A         C  A  -  -AA      CTTA
                AAGAAG GATGTTGGTG GGTTCAATC GA GA CG   TTTATG    
                |||||| |||||||||| ||||||||| || || ||   ||||||     
                TTCTTC CTATAACCGC CCGAGTTAG CT CT GC   AAATGC    
TTATGCCTTACTTTTA      A          G         A  -  A  AAG      TTTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Solyc08g078800.1.1 0.0 0 0 (2)
Solyc11g013150.1.1 2.0 1 0 (2)
Solyc07g049180.3.1 4.0 NA 2 (1)
Solyc01g080910.2.1 NA NA 2 (5)
Solyc02g032450.3.1 NA NA 2 (1)
Solyc02g093340.3.1 NA NA 2 (2)
Solyc03g115167.1.1 NA NA 2 (4)
Solyc10g054590.2.1 NA 2 2 (5)
Solyc10g083610.2.1 NA NA 2 (1)
Solyc11g011140.2.1 NA NA 2 (4)
Solyc01g090950.3.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference