Sly-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   CTA     T  T    CT         C       C     -CACAT    TTT
      TGAAA AG AACT  GATATTGGC TGGTTCA TCAGA      ATTA   
      ||||| || ||||  ||||||||| ||||||| |||||      ||||   T
      ACTTT TC TTGA  CTATAACTG GCCGAGT AGTTT      TAGT   
CATATC     -  C    CT         T       T     TCATTT    TAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Solyc01g094950.3.1 3.5 NA 2 (1)
Solyc11g007610.2.1 4.5 NA 2 (1)
Solyc01g090950.3.1 1.0 NA NA
Solyc08g078800.1.1 1.0 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference