Sly-MIR171i

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAA   TATATC     A                   G      A  TT      TAA
     AGG      ATACG GATGTTGGTGCGGTTCAAT AGAAAG AG  GTTGAA   
     |||      ||||| ||||||||||||||||||| |||||| ||  ||||||    
     TCT      TGTGC CTATAACCGTGCCGAGTTA TTTTTC TC  CAGTTT   
AAATG   TATCAC     A                   G      A  -C      TTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Solyc02g079320.3.1 4.5 NA 1 (1)
Solyc08g078800.1.1 0.5 0 2 (1)
Solyc01g107980.3.1 NA NA 2 (1)
Solyc01g090950.3.1 0.5 NA 3 (1)

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference