Sly-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    AT   ----- GAA     - A                  - G     - C  T       AA
   A  GGA     T   TACAC G GATATTGGTGCGGTTCAA T AGAAA G AG ACTTAAG  
   |  |||     |   ||||| | |||||||||||||||||| | ||||| | || |||||||  C
   T  CTA     A   TGTGC C TATAACCGCGCCGAGTTA T TTTTC T CT GAGTTTT  
ATT --   AATCG ---     A -                  G -     A -  -       TA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Solyc08g078800.1.1 0.0 0 2 (4)
Solyc01g090350.3.1 4.0 NA 2 (4)
Solyc11g020670.1.1 4.0 NA 2 (5)
Solyc01g107980.3.1 NA NA 2 (1)
Solyc02g079100.3.1 NA NA 2 (6)
Solyc03g093800.1.1 NA NA 2 (1)
Solyc05g051400.3.1 NA NA 2 (2)
Solyc06g066090.3.1 NA NA 2 (2)
Solyc07g064080.3.1 NA NA 2 (3)
Solyc11g010680.3.1 NA NA 2 (2)
Solyc01g090950.3.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference