Sly-MIR171j

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   G           G   T  C                   -  AATT    ATTCG
    ATGAAGAAGAA ACA GG GTGATATTGGTTTGGCTCA CT    TCTG     
    ||||||||||| ||| || ||||||||||||||||||| ||    ||||      
    TACTTCTTCTT TGT CT CACTATAACCAAGCCGAGT GA    AGAC     
GCCA           A   T  -                   A  GAAT    AAAGC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Solyc11g013150.1.1 0.0 0 2 (3)
Solyc03g117760.3.1 5.0 NA 2 (5)
Solyc08g082530.3.1 5.0 NA 2 (1)
Solyc01g080910.2.1 NA NA 2 (7)
Solyc03g118020.3.1 NA NA 2 (2)
Solyc05g006010.3.1 NA NA 2 (2)
Solyc07g045290.3.1 NA NA 2 (2)
Solyc08g005630.3.1 NA NA 2 (3)
Solyc08g008030.3.1 NA NA 2 (3)
Solyc07g063860.3.1 1.5 NA NA
Solyc08g069180.3.1 1.5 NA NA
Solyc12g042177.1.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference