PmiREN: Plant microRNA Encyclopedia

Sly-MIR171k

Basic info.

miRNA locus ID
Sly-MIR171k

miRNA locus accession
PmiREN019078

Organism
Solanum lycopersicum

Genomic location
Sly-SL3.0ch07 2683292 2683417 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TATAT      -----       C          A            A  -  -AG     GTTTT
TA     TGAATT     AGAGAAG GATGTTGGTG GGTTCAATCTGA GA CG   TTTAC     
||     ||||||     ||||||| |||||||||| |||||||||||| || ||   |||||     A
AT     ACTTAA     TTTCTTT CTATAACCGC CCGAGTTAGACT CT GC   AAATG     
  ---TT      CCATT       A          G            -  A  AAG     ACTTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Solyc08g078800.1.1	0.0	0	0 (7)
Solyc11g013150.1.1	2.0	1	0 (2)
Solyc08g015960.3.1	4.0	NA	2 (2)
Solyc03g117760.3.1	4.5	NA	2 (3)
Solyc02g091100.3.1	NA	NA	2 (3)
Solyc03g096380.3.1	NA	NA	2 (3)
Solyc03g116740.3.1	NA	NA	2 (3)
Solyc05g053210.3.1	NA	NA	2 (5)
Solyc06g050120.3.1	NA	NA	2 (6)
Solyc07g006790.3.1	NA	NA	2 (6)
Solyc07g065050.3.1	NA	NA	2 (2)
Solyc09g082110.3.1	NA	NA	2 (4)
Solyc09g082160.3.1	NA	NA	2 (3)
Solyc09g091470.3.1	NA	NA	2 (5)
Solyc09g092090.3.1	NA	NA	2 (1)
Solyc10g085980.2.1	NA	2	2 (4)
Solyc11g007540.2.1	NA	NA	2 (2)
Solyc12g095880.2.1	NA	NA	2 (2)
Solyc01g090950.3.1	1.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Functional Characterization of microRNA171 Family in Tomato. Plants, 2019

>Overexpression of a tomato miR171 target gene SlGRAS24 impacts multiple agronomical traits via regulating gibberellin and auxin homeostasis. Plant Biotechnol J, 2017

>Genome-wide identification, phylogeny and expression analysis of GRAS gene family in tomato. BMC Plant Biol, 2015