PmiREN: Plant microRNA Encyclopedia

Spe-MIR171a

Basic info.

miRNA locus ID
Spe-MIR171a

miRNA locus accession
PmiREN019510

Organism
Solanum pennellii

Genomic location
Spe-NC_028638.1 50680486 50680615 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CTA     C  T    TT         C       C      AAC            AT   TG
     TGAAA AG AACT  GATATTGGC TGGTTCA TCAGAC   AAAATGAAAACT  ATT  
     ||||| || ||||  ||||||||| ||||||| ||||||   ||||||||||||  |||  A
     ACTTT TC TTGA  CTATAACCG GCCGAGT AGTTTG   TTTTGCTTTTGA  TGG  
CTTTC     C  T    CT         T       T      -CT            GT   TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_015206540.1	0.5	NA	NA
XM_015230113.1	0.5	NA	NA
XM_015230114.1	0.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spe-MIR171a

>