Spi-MIR171c

Basic info.

• miRNA locus ID
• Spi-MIR171c

• miRNA locus accession
• PmiREN019744

• Organism
• Solanum pimpinellifolium

• Genomic location
• Spi-AGFK01039629.1  1800  1922  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

TTCAAAT    --GAA      A                   G      C  T      GAAC
       GGAT     TACACG GATATTGGTGCGGTTCAAT AGAAAG AG ACTTAA    
       ||||     |||||| ||||||||||||||||||| |||||| || ||||||     
       TCTA     ATGTGC CTATAACCGCGCCGAGTTA TTTTTC TC TGAGTT    
GTTGATT    AATCG      A                   G      A  -      TATA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference