Spi-MIR171d

Basic info.

• miRNA locus ID
• Spi-MIR171d

• miRNA locus accession
• PmiREN019745

• Organism
• Solanum pimpinellifolium

• Genomic location
• Spi-AGFK01088862.1  10830  10954  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

TGGGATT        ---------     C          A         C  A  -  -AA      CTTA
       AAAATGGA         AGAAG GATGTTGGTG GGTTCAATC GA GA CG   TTTATG    
       ||||||||         ||||| |||||||||| ||||||||| || || ||   ||||||     
       TTTTGCCT         TCTTC CTATAACCGC CCGAGTTAG CT CT GC   AAATGC    
               TACTTTTAT     A          G         A  -  A  AAG      TTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference