PmiREN: Plant microRNA Encyclopedia

Stu-MIR171c

Basic info.

miRNA locus ID
Stu-MIR171c

miRNA locus accession
PmiREN019857

Organism
Solanum tuberosum

Genomic location
Stu-ST4.03ch06 50643742 50643859 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GATTGATCAACTAATTGA                             T   CAC   AG
                    GATGTTGGTGTGGTTCAATTAGATAACAA CTC   ATA  
                    ||||||||||||||||||||||||||||| |||   |||   
                    CTATAACCGTGCCGAGTTAGTTTATTGTT GAG   TAT  
TACAATAAAAGGAATGTACA                             T   --A   TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PGSC0003DMT400033037	1.0	NA	4 (1)
PGSC0003DMT400012104	0.5	NA	NA
PGSC0003DMT400066799	0.5	NA	NA

Mature miRNA conservation

Link

Reference

>Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing. BMC Plant Biol, 2014