Sbi-MIR171b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GGCC    ----C   C    G                    C      TC       AGA  AGA GC
    GCCG     GCG GACG GGTATTGGCGCGGTTCAATT GAGAGC  GAGCCCT   CT   C  
    ||||     ||| |||| |||||||||||||||||||| ||||||  |||||||   ||   |  C
    CGGT     CGC CTGC CTATAACCGTGCCGAGTTAG CTCTCG  CTCGGGG   GA   G  
  GT    AAGTT   C    A                    T      -T       -GA  GAG GA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

SbRio.01G548900.1 0.0 NA NA
SbRio.04G310200.1 0.5 NA NA
SbRio.04G310500.1 0.5 NA NA
SbRio.06G189500.1 0.5 NA NA
SbRio.01G325800.1 1.0 NA NA
SbRio.10G003900.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference